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NCI-PID-PubMed Genomics Knowledge Base Completion Dataset

This dataset includes a database of regulation relationships among genes and corresponding textual mentions of pairs of genes in PubMed article abstracts.

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  • Version:

    1.0

    Date Published:

    11/16/2016

    File Name:

    Release2.0.zip

    File Size:

    7.0 MB

    The database is derived from the NCI PID Pathway Interaction Database, and the textual mentions are extracted from cooccurring pairs of genes in PubMed abstracts, processed and annotated by Literome (Poon et al. 2014). This dataset was used in the paper “Compositional Learning of Embeddings for Relation Paths in Knowledge Bases and Text” (Toutanova, Lin, Yih, Poon, and Quirk, 2016). More details can be found in the included README.

  • Supported Operating Systems

    Android, Apple Mac OS X, Windows 10, Windows 8

    • Windows 8, Windows 10, Android, Apple Mac OS X

    • Click Download and follow the instructions.

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