Publication DPVis: Visual Analytics With Hidden Markov Models for Disease Progression Pathways. Bum Chul Kwon, Vibha Anand, Kristen Severson, Soumya Ghosh, Zhaonan Sun, Brigitte I Frohnert, Markus Lundgren, Kenney Ng IEEE Transactions on Visualization and Computer Graphics | April 2020, Vol 27(9): pp. 3685-3700
Publication Urinary detection of lung cancer in mice via noninvasive pulmonary protease profiling Jesse D. Kirkpatrick, Andrew D. Warren, Ava P. Soleimany, Peter M. K. Westcott, Justin C. Voog, Carmen Martin-Alonso, Heather E. Fleming, Tuomas Tammela, Tyler Jacks, Sangeeta N. Bhatia Science Translational Medicine | March 2020, Vol 12(537)
Publication Black box medicine and transparency – Interpretability by design framework Alison Hall, Johan Ordish, Colin Mitchell, Hannah Richardson (nee Murfet) MSR-TR-2020-53 | February 2020 Published by PHG Foundation Video
Publication Personalized Input-Output Hidden Markov Models for Disease Progression Modeling. Kristen Severson, Lana M. Chahine, Luba Smolensky, Kenney Ng, Jianying Hu, Soumya Ghosh December 2019
Publication Machine learning-guided channelrhodopsin engineering enables minimally invasive optogenetics. Claire N. Bedbrook, Kevin Kaichuang Yang, J. Elliott Robinson, Elisha D. Mackey, Viviana Gradinaru, Frances H. Arnold Nature Methods | October 2019, Vol 16(11): pp. 1176-1184
Publication Algorithms as medical devices Alison Hall, Johan Ordish , Hannah Richardson (nee Murfet) MSR-TR-2019-48 | September 2019 Published by PHG Foundation Video
Publication Renal clearable catalytic gold nanoclusters for in vivo disease monitoring Colleen N. Loynachan, Ava P. Soleimany, Jaideep S. Dudani, Yiyang Lin, Adrian Najer, Ahmet Bekdemir, Qu Chen, Sangeeta N. Bhatia, Molly M. Stevens Nature Nanotechnology | August 2019, Vol 14(9): pp. 883-890
Publication DoubleTransfer at MEDIQA 2019: Multi-Source Transfer Learning for Natural Language Understanding in the Medical Domain. Yichong Xu, Xiaodong Liu, Chunyuan Li, Hoifung Poon, Jianfeng Gao BioNLP 2019 | August 2019
Publication Unsupervised Learning with Contrastive Latent Variable Models Kristen Severson, Soumya Ghosh, Kenney Ng 2019 National Conference on Artificial Intelligence | July 2019
Publication Machine-learning-guided directed evolution for protein engineering. Kevin Kaichuang Yang, Zachary Wu, Frances H Arnold Nature Methods | July 2019, Vol 16(8): pp. 687-694