Genetic Engineering of Living Cells

Interpretation of morphogen gradients by a synthetic bistable circuit

Paul Grant, Gregory Szep, Om Patange, Jacob Halatek, Valerie Coppard, Attila Csikasz-Nagy, Jim Haseloff, James C. W. Locke, Neil Dalchau, Andrew Phillips

Nature Communications | November 2020, Vol 11(5545)

Publication Project

Turing Patterning in Stratified Domains

Andrew L. Krause, Vaclav Klika, Jacob Halatek, Paul Grant, Thomas L. Woolley, Neil Dalchau, Eamonn A. Gaffney

Bulletin of Mathematical Biology | October 2020, Vol 82(136)

Publication Publication Project

Stochastic pulsing of gene expression enables the generation of spatial patterns in Bacillus subtilis biofilms

Eugene Nadezhdin, Niall Murphy, Neil Dalchau, Andrew Phillips, James C. W. Locke

Nature Communications | February 2020, Vol 11: pp. 950

Publication Project

Efficient Amortised Bayesian Inference for Hierarchical and Nonlinear Dynamical Systems

Geoffrey Roeder, Paul Grant, Andrew Phillips, Neil Dalchau, Ted Meeds

ICML 2019 | June 2019

Author's Version PDF Project Project

Escherichia coli can survive stress by noisy growth modulation

Om Patange, Christian Schwall, Matt Jones, Casandra Villava, Douglas A. Griffith, Andrew Phillips, James C.W. Locke

Nature Communications | September 2018, Vol 53(33)

Publication Project

Synthesizing and tuning stochastic chemical reaction networks with specified behaviours

Niall Murphy, Rasmus Petersen, Andrew Phillips, Boyan Yordanov, Neil Dalchau

Journal of the Royal Society Interface | August 2018

Publication Publication Project Project

Computing with biological switches and clocks

Neil Dalchau, Gregory Szep, Rosa Hernansaiz-Ballesteros, Chris P Barnes, Luca Cardelli, Andrew Phillips, Attila Csikasz-Nagy

Natural Computing | June 2018

Publication Publication Project Project

Beyond activator-inhibitor networks: the generalised Turing mechanism

Stephen Smith, Neil Dalchau

March 2018

Publication Project

Model reduction enables Turing instability analysis of large reaction–diffusion models

Stephen Smith, Neil Dalchau

Journal of the Royal Society Interface | March 2018, Vol 15

Publication Publication Project

Computational algorithms as biological switches

Rosa Hernansaiz-Ballesteros, Neil Dalchau, Luca Cardelli, Attila Csikasz-Nagy

Proceedings of the Evry Spring School on Advances in Systems and Synthetic Biology | March 2016

Publication Project

Orthogonal Intercellular Signaling For Programmed Spatial Behavior

Paul Grant, Neil Dalchau, James R Brown, Fernan Federici, Timothy J Rudge, Boyan Yordanov, Om Patange, Andrew Phillips, Jim Haseloff

Molecular Systems Biology | January 2016, Vol 12: pp. 849

Publication Publication

Characterization of intrinsic properties of promoters

Timothy J. Rudge, James R. Brown, Fernan Federici, Neil Dalchau, Andrew Phillips, James W Ajioka, Jim Haseloff

ACS Synthetic Biology | October 2015

Publication Publication Project

A Computational Method for Automated Characterization of Genetic Components

Neil Dalchau, Boyan Yordanov, Paul Grant, Michael Pedersen, Stephen Emmott, Jim Haseloff, Andrew Phillips

ACS Synthetic Biology | March 2014, Vol 3(8): pp. 578-588

Publication Publication Project

Computational Modeling of Synthetic Microbial Biofilms

Timothy J. Rudge, Paul J. Steiner, Andrew Phillips, Jim Haseloff

ACS Synthetic Biology | July 2012, Vol 1: pp. 345-352

Publication Project

Towards the rational design of synthetic cells with prescribed population dynamics

Neil Dalchau, Matthew Smith, Samuel Martin, James R Brown, Stephen Emmott, Andrew Phillips

Journal of the Royal Society Interface | May 2012, Vol 9: pp. 2883-2898

Publication Project

Towards programming languages for genetic engineering of living cells

Michael Pedersen, Andrew Phillips

Journal of the Royal Society Interface | April 2009, Vol 6: pp. S437-S450

Publication Publication Publication Project

Interpretation of morphogen gradients by a synthetic bistable circuit

Paul Grant, Gregory Szep, Om Patange, Jacob Halatek, Valerie Coppard, Attila Csikasz-Nagy, Jim Haseloff, James C. W. Locke, Neil Dalchau, Andrew Phillips

Nature Communications | November 2020, Vol 11(5545)

Publication Project

Stochastic pulsing of gene expression enables the generation of spatial patterns in Bacillus subtilis biofilms

Eugene Nadezhdin, Niall Murphy, Neil Dalchau, Andrew Phillips, James C. W. Locke

Nature Communications | February 2020, Vol 11: pp. 950

Publication Project

Escherichia coli can survive stress by noisy growth modulation

Om Patange, Christian Schwall, Matt Jones, Casandra Villava, Douglas A. Griffith, Andrew Phillips, James C.W. Locke

Nature Communications | September 2018, Vol 53(33)

Publication Project

Orthogonal Intercellular Signaling For Programmed Spatial Behavior

Paul Grant, Neil Dalchau, James R Brown, Fernan Federici, Timothy J Rudge, Boyan Yordanov, Om Patange, Andrew Phillips, Jim Haseloff

Molecular Systems Biology | January 2016, Vol 12: pp. 849

Publication Publication

Interpretation of morphogen gradients by a synthetic bistable circuit

Paul Grant, Gregory Szep, Om Patange, Jacob Halatek, Valerie Coppard, Attila Csikasz-Nagy, Jim Haseloff, James C. W. Locke, Neil Dalchau, Andrew Phillips

Nature Communications | November 2020, Vol 11(5545)

Publication Project

Turing Patterning in Stratified Domains

Andrew L. Krause, Vaclav Klika, Jacob Halatek, Paul Grant, Thomas L. Woolley, Neil Dalchau, Eamonn A. Gaffney

Bulletin of Mathematical Biology | October 2020, Vol 82(136)

Publication Publication Project

Synthesizing and tuning stochastic chemical reaction networks with specified behaviours

Niall Murphy, Rasmus Petersen, Andrew Phillips, Boyan Yordanov, Neil Dalchau

Journal of the Royal Society Interface | August 2018

Publication Publication Project Project

Beyond activator-inhibitor networks: the generalised Turing mechanism

Stephen Smith, Neil Dalchau

March 2018

Publication Project

Model reduction enables Turing instability analysis of large reaction–diffusion models

Stephen Smith, Neil Dalchau

Journal of the Royal Society Interface | March 2018, Vol 15

Publication Publication Project

Computational algorithms as biological switches

Rosa Hernansaiz-Ballesteros, Neil Dalchau, Luca Cardelli, Attila Csikasz-Nagy

Proceedings of the Evry Spring School on Advances in Systems and Synthetic Biology | March 2016

Publication Project

Orthogonal Intercellular Signaling For Programmed Spatial Behavior

Paul Grant, Neil Dalchau, James R Brown, Fernan Federici, Timothy J Rudge, Boyan Yordanov, Om Patange, Andrew Phillips, Jim Haseloff

Molecular Systems Biology | January 2016, Vol 12: pp. 849

Publication Publication

Characterization of intrinsic properties of promoters

Timothy J. Rudge, James R. Brown, Fernan Federici, Neil Dalchau, Andrew Phillips, James W Ajioka, Jim Haseloff

ACS Synthetic Biology | October 2015

Publication Publication Project

A Computational Method for Automated Characterization of Genetic Components

Neil Dalchau, Boyan Yordanov, Paul Grant, Michael Pedersen, Stephen Emmott, Jim Haseloff, Andrew Phillips

ACS Synthetic Biology | March 2014, Vol 3(8): pp. 578-588

Publication Publication Project

Computational Modeling of Synthetic Microbial Biofilms

Timothy J. Rudge, Paul J. Steiner, Andrew Phillips, Jim Haseloff

ACS Synthetic Biology | July 2012, Vol 1: pp. 345-352

Publication Project

Towards the rational design of synthetic cells with prescribed population dynamics

Neil Dalchau, Matthew Smith, Samuel Martin, James R Brown, Stephen Emmott, Andrew Phillips

Journal of the Royal Society Interface | May 2012, Vol 9: pp. 2883-2898

Publication Project

Towards programming languages for genetic engineering of living cells

Michael Pedersen, Andrew Phillips

Journal of the Royal Society Interface | April 2009, Vol 6: pp. S437-S450

Publication Publication Publication Project

Efficient Amortised Bayesian Inference for Hierarchical and Nonlinear Dynamical Systems

Geoffrey Roeder, Paul Grant, Andrew Phillips, Neil Dalchau, Ted Meeds

ICML 2019 | June 2019

Author's Version PDF Project Project

Computing with biological switches and clocks

Neil Dalchau, Gregory Szep, Rosa Hernansaiz-Ballesteros, Chris P Barnes, Luca Cardelli, Andrew Phillips, Attila Csikasz-Nagy

Natural Computing | June 2018

Publication Publication Project Project

Interpretation of morphogen gradients by a synthetic bistable circuit

Paul Grant, Gregory Szep, Om Patange, Jacob Halatek, Valerie Coppard, Attila Csikasz-Nagy, Jim Haseloff, James C. W. Locke, Neil Dalchau, Andrew Phillips

Nature Communications | November 2020, Vol 11(5545)

Publication Project

Turing Patterning in Stratified Domains

Andrew L. Krause, Vaclav Klika, Jacob Halatek, Paul Grant, Thomas L. Woolley, Neil Dalchau, Eamonn A. Gaffney

Bulletin of Mathematical Biology | October 2020, Vol 82(136)

Publication Publication Project

Stochastic pulsing of gene expression enables the generation of spatial patterns in Bacillus subtilis biofilms

Eugene Nadezhdin, Niall Murphy, Neil Dalchau, Andrew Phillips, James C. W. Locke

Nature Communications | February 2020, Vol 11: pp. 950

Publication Project

Escherichia coli can survive stress by noisy growth modulation

Om Patange, Christian Schwall, Matt Jones, Casandra Villava, Douglas A. Griffith, Andrew Phillips, James C.W. Locke

Nature Communications | September 2018, Vol 53(33)

Publication Project

Synthesizing and tuning stochastic chemical reaction networks with specified behaviours

Niall Murphy, Rasmus Petersen, Andrew Phillips, Boyan Yordanov, Neil Dalchau

Journal of the Royal Society Interface | August 2018

Publication Publication Project Project

Computing with biological switches and clocks

Neil Dalchau, Gregory Szep, Rosa Hernansaiz-Ballesteros, Chris P Barnes, Luca Cardelli, Andrew Phillips, Attila Csikasz-Nagy

Natural Computing | June 2018

Publication Publication Project Project

Model reduction enables Turing instability analysis of large reaction–diffusion models

Stephen Smith, Neil Dalchau

Journal of the Royal Society Interface | March 2018, Vol 15

Publication Publication Project

Orthogonal Intercellular Signaling For Programmed Spatial Behavior

Paul Grant, Neil Dalchau, James R Brown, Fernan Federici, Timothy J Rudge, Boyan Yordanov, Om Patange, Andrew Phillips, Jim Haseloff

Molecular Systems Biology | January 2016, Vol 12: pp. 849

Publication Publication

Characterization of intrinsic properties of promoters

Timothy J. Rudge, James R. Brown, Fernan Federici, Neil Dalchau, Andrew Phillips, James W Ajioka, Jim Haseloff

ACS Synthetic Biology | October 2015

Publication Publication Project

A Computational Method for Automated Characterization of Genetic Components

Neil Dalchau, Boyan Yordanov, Paul Grant, Michael Pedersen, Stephen Emmott, Jim Haseloff, Andrew Phillips

ACS Synthetic Biology | March 2014, Vol 3(8): pp. 578-588

Publication Publication Project

Computational Modeling of Synthetic Microbial Biofilms

Timothy J. Rudge, Paul J. Steiner, Andrew Phillips, Jim Haseloff

ACS Synthetic Biology | July 2012, Vol 1: pp. 345-352

Publication Project

Towards the rational design of synthetic cells with prescribed population dynamics

Neil Dalchau, Matthew Smith, Samuel Martin, James R Brown, Stephen Emmott, Andrew Phillips

Journal of the Royal Society Interface | May 2012, Vol 9: pp. 2883-2898

Publication Project

Towards programming languages for genetic engineering of living cells

Michael Pedersen, Andrew Phillips

Journal of the Royal Society Interface | April 2009, Vol 6: pp. S437-S450

Publication Publication Publication Project

Efficient Amortised Bayesian Inference for Hierarchical and Nonlinear Dynamical Systems

Geoffrey Roeder, Paul Grant, Andrew Phillips, Neil Dalchau, Ted Meeds

ICML 2019 | June 2019

Author's Version PDF Project Project

Computational algorithms as biological switches

Rosa Hernansaiz-Ballesteros, Neil Dalchau, Luca Cardelli, Attila Csikasz-Nagy

Proceedings of the Evry Spring School on Advances in Systems and Synthetic Biology | March 2016

Publication Project

Beyond activator-inhibitor networks: the generalised Turing mechanism

Stephen Smith, Neil Dalchau

March 2018

Publication Project